Iraqi Journal of Science

The conducted study compares the phytochemical and the antimicrobial potential of four varieties of Brassica napus seed oils. The plant seeds were cultivated during the winter growing season. Soxhlet extractor and Gas Chromatography-Mass Spectrometer (GC-MS) were used for essential oil analysis. The micro broth dilution assay was applied to test the antimicrobial potential (MIC: Minimum inhibitory concentration, MBC: Minimum bactericidal concentration) of the extracted essential oils against different bacterial strains. A total of 56 phytochemicals were found, including 23 and 25 compounds in the oils of Pactol and Rapifera seed varieties, respectively, and 21 compounds in each of Bacara and Rally seed oils. Oleic acid constituted about 35.79 %, 15.62%, 7%, and 2.41 % for Rally, Bacara, Rapifera, and Pactol seed oils, respectively. Gram-positive bacteria, Streptococcus pyogenes and Streptococcus agalactiae, showed lower resistance potentials (MIC= 0.78%, 3.125% respectively) (MBC=1.36%, 6.25% respectively) to the essential oils compared with Staphylococcus aureus. Escherichia coli showed higher sensitivity (6.25% and 12.5% for MIC and MBC, respectively) than Klebsiella pneumonia and Pseudomonas aeruginosa to the B. napus seed oils. Gram-positive bacteria were more sensitive to the tested essential oils than Gram-negative bacteria. Overall, four different seed varieties have important chemicals and fatty acids. Oleic acid was the most common carboxylic acid (fatty acid) and 2,4-decadienal with hexanal were the most prevalent aldehydes in four seed oils. Tested B. napus seed essential oils showed antimicrobial activities against various Gram-positive and negative bacteria and Candida albicans, with Pactol seed oils exerting the highest activity.

Abuse of androgens and overtraining expose bodybuilders to multifactorial stress influences related to endocrine activity. Endocrine responses in 23 bodybuilder athletes were investigated after a strength training period, during which they were taking high doses of androgenic-anabolic steroids. Serum concentrations of TSH, T3, and T4 were unchanged significantly. Serum LH and FSH concentrations decreased dramatically (P<0.05). In addition, low mean concentration of serum testosterone was recorded, with more substantial reduction in participants of elder ages. The multiple regression model used in this analysis supported this inference. On the other hand, a positive association was observed between levels of blood lipids (total cholesterol, triglyceride) and the outcome predictor (mean serum testosterone level). The results also suggested a negative correlation between testosterone level and each of age and HDL level. The current study shows that excessive bodybuilding exercise has an impact on the hypothalamic–pituitary–thyroid (HPT) axis in top-level athletes. Also, simultaneous usage of anabolic steroids induces extreme shifts in the hypothalamic-pituitary–gonadal (HPGA) axis, which is reflected as changes in testosterone level, development of the overtraining syndrome, and adverse influences on hormonal control.

Fungi produce a series of toxic compounds on corn, especially Fumonisin B1 (FB1) toxin produced by Fusarium spp. and promoting cancer activity in humans and animals. This study aimed to the isolation and identification of fungi associated with local corn seeds and the detection for the presence of FB1 by using ELISA technique. Thirty samples of corn ears were collected from silos and markets in Baghdad city during the period from November 2018 to March 2019. The present study found that Fusarium was the dominant isolate among fungi in terms of the relative density 57.07%, followed by Aspergillus 31.17%, Rhizopus 3.36%, Alternaria 2.88%, Mucor 2.16%, Penicillium 1.92%, Trichothecium 0.96%, and Helminthosporium 0.48%. FB1 was detected in all samples of the silos and markets with a concentration range of 13.69 - 175.54 μg/kg. There were no significant differences in FB1concentration among samples collected from the silos and markets. Also, no relationship was found between the number of infected seeds by Fusarium spp. and FB1concentrations.

Diabetes mellitus (T2DM) is a multifactorial syndrome that israpidly rising in all the continents ofthe globe, causing elevated blood sugar levels in affected people. A sample of 81 Iraqi T2DM patients was investigated based on several parameters. Glycemic control parameters includedlevels of fasting blood glucose (FBG), glycated hemoglobin (HbA1C), and insulin, along with insulin resistance (IR) and insulin sensitivity (IS). Renal function tests includedmeasuring the blood levels of urea and creatinine. Oxidative stress parameters included total antioxidant capacity (TAC) and thelevel of reactive oxygen species (ROS). The results of the present study showed a highly significant (P˂0.01) increase in FBG, HbA1c, insulin and IR levels in T2DM patients as compared to control.Insulin sensitivity showed a highly significant (p˂0.01) decrease in patients compared with control.Urea and creatinine levelsincreased in T2DM patients, but the differences were insignificant. TAC level significantly (P<0.05) increased in patients compared with control. Also, the levels of ROSrevealed a highly significant (P<0.01) increasein T2DM patients compared with the control. Correlation analysis showedthat FBG has a highly significant (P<0.01) positive correlation with IR, urea, creatinine and ROS, as well as a significant (P<0.05) positive correlation with TAC. However, FBG shows a highlysignificant (P< 0.01) inverse correlation with IS. The levels of HbA1C show a significant (P<0.05) positive correlation with IR, creatinine, and TAC, whereas it has a highly significant (P<0.01) positive relation with ROS. However, HbA1C level has a highly significant (P<0.01) inverse relation with IS. Insulin has highly significant (P<0.01) positive and negative associations with IR and IS, respectively.IR showshighlya significant (P<0.01) inverse correlation with IS, significant (P<0.05) positive correlation with creatinine, and highly significant (P<0.01) positive correlation

The use of medicinal plants in the treatment of harmful impacts of xenobiotics in animals is attracting an increasing attention in recent times. The aim of the current study is to assess the preventive potential of Costus afer aqueous leaves extract (CAAE) in treating metabolic aberrations imposed by crude oil contaminated diet in Wistar albino rats. Six groups of rats were treated as follows: A = Normal diet; B= Normal diet + 100 mg/kg body weight of CAAE; C =Normal diet + 200 mg/kg body weight of CAAE; D= Crude oil contaminated diet; E= crude oil contaminated diet + 100 mg/kg body weight of CAAE, F = crude oil contaminated diet + 200 mg/kg body weight of CAAE. After thirty days of exposure to the diet and administration of the corresponding plant extracts, the rats were sacrificed with chloroform and the required organs were excised. The hematological indices, as well as function indicators and levels of drug metabolizing enzymes in the liver and kidney, were investigated with standard protocols. The results indicated that the hematological parameters and kidney and liver function indices were altered in rats fed with crude oil contaminated diet. However, the values came close to those in control rats when Costus afer aqueous extracts were administered. Similarly, the activities of oxidase enzymes (aldehyde oxidase, monoamine oxidase, xanthine oxidase, and sulphite oxidase), following their inhibition by the ingestion of crude oil contaminated diet, equally restored close to control values upon treatment with Costus afer aqueous extract. This study, therefore, was able to establish an aqueous extract of Costus afer leave as an antidote for crude oil intoxication.

Infection with Trichomonas vaginalis and its relation to some diseases have lately had much attention. The objective of this study was to assess the infection rate of T. vaginalis and its relation to pelvic inflammatory diseases, infertility, and vaginosis. The study also assessed some demographic, clinical, and immunological parameters in women infected with T. vaginalis. The study included 160 non-pregnant married women who attended some private clinics and public hospitals in Baghdad from October 2020 to February 2021. All participants had symptoms of vaginal discharge only or vaginal discharge with lower abdominal pain. The participants were divided into an infertility group (n = 61) and fertility group (n = 99). The participants were also divided into Pelvic Inflammatory Disease (PID) group (n=41) and non-PID group (n=119). All participants underwent vaginal examination. Vaginal swabs were taken from all participants for T. vaginalis, bacteria, yeast, clue cell, pH, and vaginal leukocyte examinations. Sera were also taken to measure both IL-1α and IL-8 using sandwich ELISA technique to compare them with apparently healthy control subjects who had no vaginal discharge. The study revealed that the total infection rate of T. vaginalis was 14.37%. The results showed no significant relations between T. vaginalis positive status and each of age, infertility, vaginosis, contraceptive use, and high BMI. While a significant relation (P=0.03) was noticed between T. vaginalis positive status and PID. Women with PID exhibited a higher infection rate with T. vaginalis (24.39%) versus non PID women (10.92%). High clue cells number was not significantly related to T. vaginalis positive status, only if both PID and vaginosis were considered in the statistical analysis. In addition, high leukocytes count was not related to T. vaginalis positive status. While abnormal vaginal pH was significantly (P=0.01) related to T. vaginalis positive status. Finally, the levels of both IL-1α and IL-8 were noticed to be declined in women who had T. vaginalis infection, although they were not declined significantly. This study gives an insight about some clinical aspects of T. vaginalis infection among PID women. T. vaginalis is highly predictable in women with PID. Consequently, attention and more investigation would be needed on this topic in Iraq.

In this work, the performance of single-mode optical fibers (SMFs) for ultraviolet (UV) radiation monitoring and dosimetry applications is presented. In particular, this work will focus on the Radiation-Induced Absorption (RIA) phenomena in the Near-Infrared domain (NIR). Such phenomena play a very important role in the sensing mechanism for SMF. Single mode fibers with a diameter of 50 μm were used for this purpose. These fibers were dipped into germanium (Ge) solution with different concentrations (1, 3, and 5 wt%) to produce the sensing part of the sensor. For all optical fiber sensors under investigation, the results indicated the dependence of the RIA on the applied UV radiation energy. Also, a redshift in peak wavelength was obtained. The influence of Ge concentration on sensing efficiency was studied and the best results were obtained with 3 wt% concentration as compared to 1 wt % and 5 wt % concentrations. The presented sensor shows good sensitivity to UV radiation which makes it possible to be applied in medical applications.

The charge species plays a vital role in changing the field in direct current discharge (DC). This article introduces a numerical modeling in one dimension of the inner electrode diameter of oxygen-fed negative corona discharge in coaxial electrodes geometry. The properties of negative corona plasma in a concentric cylindrical electrodes (wire-cylinder) were simulated by COMSOL Multiphysics software. Various diameters of negative corona electrode, namely 0.01, 0.025, 0.05, 0.075, and 0.125 mm, were applied, where the diameter of the outer cylindrical electrode was taken as 15 mm. The model was run at atmospheric pressure and the applied negative voltage was -10 KV. Moreover, oxygen gas was used to fill the inter-electrodes distance. Furthermore, the spatial distribution of electrons, positive ions, and negative ions as a function of the diameter of negative electrode of the negative corona discharge were investigated. The study also tested the effects of the electrode diameter of the
negative corona discharge on ozone generation. The observed decrease in ozone density with the increase in negative electrode diameter was reasonable and consistent with other results provided by researchers in this field.

Utilizing first principles calculations within PW91 exchange-correlation method, we investigated a boron sheet that exhibits related electronic properties. The 2-dimensional boron sheet is flattened and has an atomic structure where the pair cores of every three ordered hexagons within the hexagonal network are loaded up by extra atoms, which saves the triangular lattice symmetry. The boron sheet takes possession of intrinsic metal properties and the electronic bands are comparable to the bands of the graphene that are close to the Fermi level. The real and imaginary parts of the dielectric function show a metallic or semiconductor behaviour, depending on the electric field direction.

The present work investigated the effect of distance from target surface on the parameters of lead plasma excited by 1064nm Q-switched Nd:YAG laser. The excitation was conducted in air, at atmospheric pressure, with pulse length of 5 ns, and at different pulse laser energies. Electron temperature was calculated by Boltzmann plot method based on the PbI emission spectral lines (369.03 nm, 416.98 nm, 523.48, and 561.94 nm). The PbI lines were recorded at different distances from the target surface at laser pulse energies of 260 and 280 mJ. The emission intensity of plasma increased with increasing the lens-to-target distance. The results also detected an increase in electron temperature with increasing the distance between the focal lens and the surface of the target in all laser energies under study. In addition, the electron number density was determined by using the Stark broadening method. The data illustrated that the electron number density was increased with increasing the distance from target surface, reaching the maximum at a distance of 11 cm for all pulse laser energy levels under study.

Reservoir characterization requires reliable knowledge of certain fundamental properties of the reservoir. These properties can be defined or at least inferred by log measurements, including porosity, resistivity, volume of shale, lithology, water saturation, and permeability of oil or gas. The current research is an estimate of the reservoir characteristics of Mishrif Formation in Amara Oil Field, particularly well AM-1, in south eastern Iraq. Mishrif Formation (Cenomanin-Early Touronin) is considered as the prime reservoir in Amara Oil Field. The Formation is divided into three reservoir units (MA, MB, MC). The unit MB is divided into two secondary units (MB1, MB2) while the unit MC is also divided into two secondary units (MC1, MC2). Using Geoframe software, the available well log images (sonic, density, neutron, gamma ray, spontaneous potential, and resistivity logs) were digitized and updated. Petrophysical properties, such as porosity, saturation of water, saturation of hydrocarbon, etc. were calculated and explained. The total porosity was measured using the density and neutron log, and then corrected to measure the effective porosity by the volume content of clay. Neutron -density cross-plot showed that Mishrif Formation lithology consists predominantly of limestone. The reservoir water resistivity (Rw) values of the Formation were calculated using Pickett-Plot method.

This study deals with the biostratigraphy of Shiranish Formation (Late Cretaceous), depending on the Ammonite and associated Foraminifera in four outcrop sections, three of which are located in Al-Sulaimaniya governorate (Dokan, Esewa and Kanny dirka sections) and one in Erbil governorate, northern Iraq (Hijran section). Fourteen species of Ammonite belonging to fourteen genera were determined, which are: Dsemoceratidae, Gaudryceras, Gunnarites, Hoplitoplacenticeras, Kitchinites, Kossmaticeratinae, Neancyloceras, Neokossmaticeras, Nostoceras, Paratexanites, Partschiceras, Phylloceras, Pseudophyllites and Yubariceras. Also, thirty- five species of Foraminifera belonging to thirteen genera were determined, which are: Cibicides, Cymopolia, Eggellina, Elphidium, Globigerinelloides, Globotruncana, Hedbergella, Heterohelix, Marginulina, Miliolid, Neobulimmina, Nodosaria and Textularia. Seven range zones were determined, three of which are of Ammonite, which are: Desmophyllites larteti (Seunes, 1892), Nostoceras (Nostoceras) hyatti and Pseudophyllites teres (Van Hoepen, 1920), whereas the others are of Foraminifera species, which are: Glt. gagnebini Tilev, Glt. tricarinata lapparenti Brotzen, Glt. tricarinata tricarinata (Querean) and Glt. Stuartiformis Dalbiez. According to these findings, the age of Shiranish Formation was determined as the Late Campanian- Maastrichtian.

The climate parameters of rainfall, and average of maximum and minimum
temperature were investigated for the period of 2000-2019 in three stations in central
and eastern Iraq (Baghdad, Diyala, and Kut provinces). Evidence of climate change
was noticed from the results, reflected by decreased mean values of annual rainfall
with increased mean of maximum and minimum temperature. In addition, the water
balance and the climatic conditions were determined for Khanaqin station for the
years 1981-2019. The analysis of Khanaqin climate parameters demonstrated total
annual mean values of rainfall of 260.86mm and evaporation of 3119.59mm. The
mean monthly relative humidity was 46.65%, sunshine was 8.39h/day, temperature
was 23.36Co and wind speed was 1.86m/sec. Water surplus was recorded in
Khanaqin area, with values of (24.00mm) (34.18mm) (40.31mm) (28.83mm) and
(19.92mm) in November, December, January, February and March respectively. The
climate classification of Khanaqin area indicated semi dry and dry climates.
Moreover, the region has water deficit that reached up to 43.56 % of the total
rainfall values.

The main goal of this study is to evaluate Mishrif Reservoir in Abu Amood oil field, southern Iraq, using the available well logs. The sets of logs were acquired for wells AAm-1, AAm-2, AAm-3, AAm-4, and AAm-5. The evaluation included the identification of the reservoir units and the calculation of their petrophysical properties using the Techlog software. Total porosity was calculated using the neutron-density method and the values were corrected from the volume of shale in order to calculate the effective porosity. Computer processed interpretation (CPI) was accomplished for the five wells. The results show that Mishrif Formation in Abu Amood field consists of three reservoir units with various percentages of hydrocarbons that were concentrated in all of the three units, but in different wells. All of the units have high porosity, especially unit two, although it is saturated with water.

Akkas Field is a structural trap with a sandstone reservoir that contains proven gas condensate. The field is a faulted anticline that consists of the Ordovician Khabour Formation. The objective of this research is to use structural reservoir characterization for hydrocarbon recovery. The stratigraphic sequence of the Silurian and older strata was subjected to an uplift that developed a gentle NW-SE trending anticline. The uplifting and folding events developed micro-fractures represented by tension cracks. These microfractures, whether they are outer arc or release fractures, are parallel to the hinge line of the anticline and perpendicular to the bedding planes. The brittle sandstone layers of the reservoir are interbedded with ductile units of shale. The sandstone layers accommodate the formation of micro fractures that play a major role to increase the secondary porosity. The gas and condensate have been stored mainly through the micro fractures. Two types of drilling have been used for experimental gas production, vertical and horizontal. Horizontal drilling was parallel to both hinge line of the anticline and micro fracture surfaces that was conducted and doubled the gas production of the vertical well multiple times. However, if used the third type of drilling, directional, that is perpendicular to the hinge line and parallel to the beddings of both flanks of the anticline gas production will increase more than the horizontal drilling. The directional drilling will become perpendicular to the fracture surfaces and allow the gas and the condensate to flow into the well from all directions. Additionally, it will reduce the effect of both semi – liquid hydrocarbon condensate and vertical sediment barriers.

A seismic study was conducted to re-interpret the Qasab and Jawan Oil fields in northwestern Iraq, south of the city of Mosul, by reprocessing many seismic sections of a number of field surveys by using the Petrel software. Two reflectors, represented by the Hartha formation, deposited during the Cretan age, and the Euphrates formation, formed during the Tertiary age, were delineated to stabilize the structural picture of these fields.
The stratigraphic study showed that the Qasab and Jawan fields represent areas of hydrocarbon accumulation. Seismic attribute analysis showed low values of instantaneous frequency in the areas of hydrocarbon accumulation. Instantaneous phase was used to determine the limits of the sequence, the nature of sedimentation, and the type of vanishing, i.e. onlap vs. toplap. Low instantaneous amplitude values were recorded, indicating hydrocarbon reservoirs in the studied area. Various other seismic stratigraphic features were studied , including the distribution mound, flat spot, and channels in the two formations, but they were discontinuous because of the tectonic effects. These activities explain reasonably the distribution of hydrocarbons in the studied area.

A mineralogical study using X-ray diffraction supported by scanning electron microscopic examination on the Paleocene- Eocene Kolosh and Gercus formations from northern Iraq is conducted to show the distribution of clay minerals and their paleoenvironmental implications. Smectite palygorskite, kaolinite, illite, and chlorite are commonly present in varying proportions within the Kolosh and Gercus formations. Association of smectite and chlorite in the claystone of the Paleocene Kolosh Formation refers to marine environment of this formation, whereas development of palygorskite fibers from smectite precursor may relate to post-depositional diagenesis. In addition, the abundance of illite and kaolinite in the Eocene Gercus Formation suggests a greater influence of terrigenous input in humid conditions, affecting the distribution of these clay minerals. The study shows vertical change in clay minerals distribution when illite and kaolinite dominate in the Eocene Gercus Formation, in comparison to chlorite and smectite abundance in the Paleocene Kolosh Formation which may relate to global warming in the Eocene.

The seismic method depends on the nature of the reflected waves from the interfaces between layers, which in turn depends on the density and velocity of the layer, and this is called acoustic impedance. The seismic sections of the East Abu-Amoud field that is located in Missan Province, south-eastern Iraq, were studied and interpreted for updating the structural picture of the major Mishrif Formation for the reservoir in the field. The Mishrif Formation is rich in petroleum in this area, with an area covering about 820 km2. The horizon was calibrated and defined on the seismic section with well logs data (well tops, check shot, sonic logs, and density logs) in the interpretation process to identify the upper and lower boundaries of the Formation. Seismic attributes were used to study the formation, including instantaneous phase attributes and relative acoustic impedance on time slice of 3D seismic data . Also, relative acoustic impedance was utilized to study the top of the Mishrif Formation. Based on these seismic attributes, karst features of the formation were identified. In addition, the nature of the lithology in the study area and the change in porosity were determined through the relative acoustic impedance The overlap of the top of the Mishrif Formation with the bottom of the Khasib Formation was determined because the Mishrif Formation is considered as an unconformity surface.

Shuaiba Formation is a carbonate succession deposited within Aptian Sequences. This research deals with the petrophysical and reservoir characterizations characteristics of the interval of interest in five wells of the Nasiriyah oil field. The petrophysical properties were determined by using different types of well logs, such as electric logs (LLS, LLD, MFSL), porosity logs (neutron, density, sonic), as well as gamma ray log. The studied sequence was mostly affected by dolomitization, which changed the lithology of the formation to dolostone and enhanced the secondary porosity that replaced the primary porosity. Depending on gamma ray log response and the shale volume, the formation is classified into three zones. These zones are A, B, and C, each can be split into three rock intervals in respect to the bulk porosity measurements. The resulted porosity intervals are: (I) High to medium effective porosity, (II) High to medium inactive porosity, and (III) Low or non-porosity intervals. In relevance to porosity, resistivity, and water saturation points of view, there are two main reservoir horizon intervals within Shuaiba Formation. Both horizons appear in the middle part of the formation, being located within the wells Ns-1, 2, and 3. These intervals are attributed to high to medium effective porosity, low shale content, and high values of the deep resistivity logs. The second horizon appears clearly in Ns-2 well only.

This paper aims at introducing a new generalized differential operator and new
subclass of analytic functions to obtain some interesting properties like coefficient
estimates and fractional derivatives

In this paper, we procure the notions of neutrosophic simply b-open set, neutrosophic simply b-open cover, and neutrosophic simply b-compactness via neutrosophic topological spaces. Then, we establish some remarks, propositions, and theorems on neutrosophic simply
b-compactness. Further, we furnish some counter examples where the result fails

The main purpose of the work is to apply a new method, so-called LTAM, which couples the Tamimi and Ansari iterative method (TAM) with the Laplace transform (LT). This method involves solving a problem of non-fatal disease spread in a society that is assumed to have a fixed size during the epidemic period. We apply the method to give an approximate analytic solution to the nonlinear system of the intended model. Moreover, the absolute error resulting from the numerical solutions and the ten iterations of LTAM approximations of the epidemic model, along with the maximum error remainder, were calculated by using MATHEMATICA® 11.3 program to illustrate the effectiveness of the method.

The stress – strength model is one of the models that are used to compute reliability. In this paper, we derived mathematical formulas for the reliability of the stress – strength model that follows Rayleigh Pareto (Rayl. – Par) distribution. Here, the model has a single component, where strength Y is subjected to a stress X, represented by moment, reliability function, restricted behavior, and ordering statistics. Some estimation methods were used, which are the maximum likelihood, ordinary least squares, and two shrinkage methods, in addition to a newly suggested method for weighting the contraction. The performance of these estimates was studied empirically by using simulation experimentation that could give more varieties for different-sized samples for stress and strength. The most interesting finding indicates the superiority of the proposed shrinkage estimation method.

In this work, the classical continuous mixed optimal control vector (CCMOPCV) problem of couple nonlinear partial differential equations of parabolic (CNLPPDEs) type with state constraints (STCO) is studied. The existence and uniqueness theorem (EXUNTh) of the state vector solution (SVES) of the CNLPPDEs for a given CCMCV is demonstrated via the method of Galerkin (MGA). The EXUNTh of the CCMOPCV ruled with the CNLPPDEs is proved. The Frechet derivative (FÉDE) is obtained. Finally, both the necessary and the sufficient theorem conditions for optimality (NOPC and SOPC) of the CCMOPCV with state constraints (STCOs) are proved through using the Kuhn-Tucker-Lagrange (KUTULA) multipliers theorem (KUTULATH).

The question on affine Riesz basis of Walsh affine systems is considered. An
affine Riesz basis is constructed, generated by a continuous periodic function f that
belongs to the space
2 L on the real line, which has a derivative almost everywhere;
in connection with the construction of this example, we note that the functions of the
classical Walsh system suffer a discontinuity and their derivatives almost vanish
everywhere. A method of regularization (improvement of differential properties) of
the generating function of Walsh affine system is proposed, and a criterion for an
affine Riesz basis for a regularized generating function that can be represented as a
sum of a series in the Rademacher system is obtained.

In this article, a new class
( ) of analytic functions which is defined by
terms of a quasi-subordination is introduced. The coefficient estimates, including the
classical - ̈ inequality of functions belonging to this class, are then
derived. Also, several special improving results for the associated classes involving
the subordination are presented.

In this paper, the reliability of the stress-strength model is derived for probability P(Y